Wisconsin Cell Wall Project

University of Wisconsin-Madison

University of Wisconsin-Madison

Department of Horticulture
Department of Botany

Cell wall project

NSF

Supported by the National Science Foundation

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Welcome to the Wisconsin Cell wall initiative headed by Prof. Sara Patterson and the late Prof. Anthony Bleecker .
To view the status of a particular enter it's Arabidopsis AGI number (ie At1g01010)

Arabidopsis Cell Wall Families

( Priority Key : High, Medium,Low,Not prioritized)

1. Pathways of substrate generation (116 genes, 33 done, 15 active, 68 queue)
   1.1. Nucleotide-sugar interconversion pathways (33 genes, 11 done, 5 active, 17 queue)
         1.1.1. AUD & SUD Group (6 genes, 2 done, 2 active, 2 queue)
         1.1.2. GAE Group (6 genes, 3 done, 2 active, 1 queue)
         1.1.3. GER Group (4 genes, 1 done, 1 active, 2 queue)
         1.1.4. GMD Group (4 genes, 1 done, active, 3 queue)
         1.1.5. UGD Group (4 genes, done, active, 4 queue)
         1.1.6. UGE Group (5 genes, 4 done, active, 1 queue)
         1.1.7. UXE Group (4 genes, done, active, 4 queue)
   1.2. C-1 Kinases and sugar salvage pathways (4 genes, done, active, 4 queue)
   1.3. Pathways of phenylpropanoid biosynthesis Set (79 genes, 22 done, 10 active, 47 queue)
         1.3.1. Laccases (16 genes, 6 done, 3 active, 7 queue)
         1.3.2. COMT (14 genes, 5 done, 3 active, 6 queue)
         1.3.3. 4CL (13 genes, 3 done, 1 active, 9 queue)
         1.3.4. CCoAOMT Group (9 genes, done, 1 active, 8 queue)
         1.3.5. PAL (4 genes, 1 done, 1 active, 2 queue)
         1.3.6. CAD (9 genes, 3 done, active, 6 queue)
         1.3.7. C3H & F5H & C4H Group (6 genes, 2 done, active, 4 queue)
         1.3.8. CCR & HCT Group (8 genes, 2 done, 1 active, 5 queue)

2. Polysaccharide syntheses and glycosyl transferases (150 genes, 40 done, 33 active, 77 queue)
   2.1. Cellulose synthase (10 genes, 2 done, 2 active, 6 queue)
         2.1.1. Cellulose synthase (10 genes, 2 done, 2 active, 6 queue)
   2.2. Cellulose synthase-like Genes (39 genes, 10 done, 11 active, 18 queue)
         2.2.1. Cellulose synthase (10 genes, 2 done, 2 active, 6 queue)
         2.2.2. CSLAGroup (9 genes, 1 done, 3 active, 5 queue)
         2.2.3. CSLBGroup (6 genes, 4 done, 2 active, 0 queue)
         2.2.4. CSLCGroup (5 genes, 1 done, 2 active, 2 queue)
         2.2.5. CSLDGroup (5 genes, done, active, 5 queue)
         2.2.6. CSLE&_CSLG_Group (4 genes, 2 done, 2 active, 0 queue)
   2.3. Glycosyl transferases (89 genes, 28 done, 20 active, 41 queue)
         2.3.1. GT family 8 (40 genes, 13 done, 11 active, 16 queue)
                   2.3.1.1. Group A Galactinol synthase (4 genes, 1 done, 1 active, 2 queue)
                   2.3.1.2. GroupB Galactinol synthase (8 genes, 2 done, 3 active, 3 queue)
                   2.3.1.3. GroupC Galactinol synthase (10 genes, 5 done, 1 active, 4 queue)
                   2.3.1.4. GroupD Galactinol synthase (18 genes, 5 done, 6 active, 7 queue)
         2.3.2. GT Family 47 (39 genes, 12 done, 6 active, 21 queue)
                   2.3.2.1. Group A (11 genes, 5 done, 2 active, 4 queue)
                   2.3.2.2. Group B (9 genes, 3 done, active, 6 queue)
                   2.3.2.3. GroupC (7 genes, 1 done, 1 active, 5 queue)
                   2.3.2.4. GroupD (7 genes, 2 done, 2 active, 3 queue)
                   2.3.2.5. GroupE (5 genes, 1 done, 1 active, 3 queue)
         2.3.3. XyloglucanFucosyltransferase (10 genes, 3 done, 3 active, 4 queue)
   2.4. Callose synthase genes (12 genes, done, active, 12 queue)

3. Secretion and targeting pathways (10 genes, 1 done, 1 active, 8 queue)
   3.1. Vesicle Traffiking (10 genes, 1 done, 1 active, 8 queue)
   3.2. Cytoskeleton-associated protein (0 genes, done, active, 0 queue)
   3.3. Plasma membrane fusion (0 genes, done, active, 0 queue)
   3.4. Endocytosis (0 genes, done, active, 0 queue)
   3.5. Cell-plate formation (0 genes, done, active, 0 queue)

4. Assembly, Architecture and Growth (455 genes, 72 done, 70 active, 313 queue)
   4.1. Growth modifying proteins (45 genes, 7 done, 13 active, 25 queue)
         4.1.1. Expansins (35 genes, 5 done, 12 active, 18 queue)
                   4.1.1.1. alpha-Expansins (26 genes, 4 done, 7 active, 15 queue)
                   4.1.1.2. beta-expansins (9 genes, 1 done, 5 active, 3 queue)
         4.1.2. Yieldins (10 genes, 2 done, 1 active, 7 queue)
   4.2. Xyloglucan endotransglucosylase-hydrolases (32 genes, 11 done, 3 active, 18 queue)
         4.2.1. Group1 Xyloglucan endotransglucosylase-hydrolases (10 genes, 3 done, 1 active, 6 queue)
         4.2.2. Group2 Xyloglucan endotransglucosylase-hydrolases (15 genes, 5 done, 1 active, 9 queue)
         4.2.3. Group3 Xyloglucan endotransglucosylase-hydrolases (7 genes, 3 done, 1 active, 3 queue)
         4.3.1. Exo-acting glycanases (17 genes, 8 done, 2 active, 7 queue)
                   4.3.1.1. beta-Galactosidase (17 genes, 8 done, 2 active, 7 queue)
         4.3.2. Endo-acting glycanases (137 genes, 8 done, 12 active, 117 queue)
                   4.3.2.1. Glycosidehydrolase family 9 (Endo-1-4-beta-glucanase) (25 genes, 6 done, 12 active, 7 queue)
                   4.3.2.2. Glycoside hydrolase family 17 (46 genes, 2 done, active, 44 queue)
                                 4.3.2.2.1. Group A Glucanases (11 genes, 1 done, active, 10 queue)
                                 4.3.2.2.2. Group B Glucanases (11 genes, done, active, 11 queue)
                                 4.3.2.2.3. Group C Glucanases (13 genes, done, active, 13 queue)
                                 4.3.2.2.4. Group D Glucanases (7 genes, 1 done, active, 6 queue)
                                 4.3.2.2.5. Group E Glucanases (4 genes, done, active, 4 queue)
                   4.3.2.3. Glycoside hydrolase family 28 (Polygalactronases) (66 genes, done, active, 66 queue)
                                 4.3.2.3.1. Polygalacturonase GroupA (9 genes, done, active, 9 queue)
                                 4.3.2.3.2. Polygalacturonase Group B (11 genes, done, active, 11 queue)
                                 4.3.2.3.3. Polygalacturonase Group C (8 genes, done, active, 8 queue)
                                 4.3.2.3.4. Polygalacturonase Group D (3 genes, done, active, 3 queue)
                                 4.3.2.3.5. Polygalacturonase Group E (7 genes, done, active, 7 queue)
                                 4.3.2.3.6. Polygalacturonase Group F (15 genes, done, active, 15 queue)
                                 4.3.2.3.7. Polygalacturonase Group F (13 genes, done, active, 13 queue)
   4.4. Lyases (35 genes, 9 done, 8 active, 18 queue)
         4.4.1. Pectate and pectin Lyases (29 genes, 9 done, 4 active, 16 queue)
                   4.4.1.1. Group A pectatelyases (11 genes, 5 done, 2 active, 4 queue)
                   4.4.1.2. Group B pectatelyases (13 genes, 2 done, active, 11 queue)
                   4.4.1.3. Group C pectatelyases (5 genes, 2 done, 2 active, 1 queue)
         4.4.2. Rhamnogalacturonan I lyases (6 genes, done, 4 active, 2 queue)
   4.5. Esterases (79 genes, 26 done, 17 active, 36 queue)
         4.5.1. Pectin methyl esterases (66 genes, 26 done, 17 active, 23 queue)
                   4.5.1.1. Group A Pectin methyl esterases (22 genes, 10 done, 7 active, 5 queue)
                   4.5.1.2. Group B Pectin methyl esterases (9 genes, 3 done, 3 active, 3 queue)
                   4.5.1.3. Group C Pectin methyl esterases (11 genes, 3 done, 3 active, 5 queue)
                   4.5.1.4. Group D Pectin methyl esterases (16 genes, 9 done, 3 active, 4 queue)
                   4.5.1.5. Group E Pectin methyl esterases (8 genes, 1 done, 1 active, 6 queue)
         4.5.2. Pectin acetylestereases (12 genes, done, active, 12 queue)
         4.5.3. Feruloyl esterases (1 genes, done, active, 1 queue)
   4.6. Structural proteins (110 genes, 3 done, 15 active, 92 queue)
         4.6.1. Hydroxyproline-rich glycoproteins (HRGPs) (17 genes, done, 4 active, 13 queue)
         4.6.2. Proline-rich proteins (PRPs) (51 genes, done, active, 51 queue)
                   4.6.2.1. Group A Proline-Rich proteins (32 genes, done, active, 32 queue)
                   4.6.2.2. Group B Proline-Rich proteins (7 genes, done, active, 7 queue)
                   4.6.2.3. Group C Proline-Rich (12 genes, done, active, 12 queue)
         4.6.3. Glycine-rich proteins (GRPs) (3 genes, done, active, 3 queue)
         4.6.4. Arabinogalactan-proteins (AGPs) (39 genes, 3 done, 11 active, 25 queue)
                   4.6.4.1. AGP Group (24 genes, 1 done, 6 active, 17 queue)
                   4.6.4.2. Fasciclin-like AGP Group (15 genes, 2 done, 5 active, 8 queue)

5. Differentiation and Secondary Wall Formation (85 genes, 6 done, 3 active, 76 queue)
   5.1. Lignan synthesis (0 genes, done, active, 0 queue)
   5.2. Lignin assembly and modification (85 genes, 6 done, 3 active, 76 queue)
         5.2.1. Laccases (16 genes, 6 done, 3 active, 7 queue)
         5.2.2. Peroxidases (38 genes, done, active, 38 queue)
                   5.2.2.1. Group A Peroxidase (8 genes, done, active, 8 queue)
                   5.2.2.2. Group B Peroxidase (9 genes, done, active, 9 queue)
                   5.2.2.3. Group C Peroxidase (9 genes, done, active, 9 queue)
                   5.2.2.4. Group D Peroxidase (12 genes, done, active, 12 queue)
         5.2.3. Germin-like proteins (31 genes, done, active, 31 queue)
                   5.2.3.1 Germin-like Group A . (8 genes, done, active, 8 queue)
                   5.2.3.2 Germin-like Group B . (10 genes, done, active, 10 queue)
                   5.2.3.3 Germin-like Group C . (4 genes, done, active, 4 queue)
                   5.2.3.4 Germin-like Group D . (9 genes, done, active, 9 queue)
   5.3. Cellulose and associated matrix polysaccharides (0 genes, done, active, 0 queue)

6. Signaling and response mechanisms (50 genes, done, 20 active, 30 queue)
   6.1. Generation of signaling molecules (0 genes, done, active, 0 queue)
   6.2. Reactive-oxygen species generation (0 genes, done, active, 0 queue)
   6.3. Receptor-like kinases and their ligands (32 genes, done, 12 active, 20 queue)
   6.4. Glycosylphosphatidylinostitol (GPI)-anchored proteins (18 genes, done, 8 active, 10 queue)

7. Classified miscellaneous genes (159 genes, 22 done, 86 active, 51 queue)
   7.1. CAZy GT 34 (7 genes, done, 3 active, 4 queue)
   7.2. CAZy GT 31 (33 genes, 6 done, 21 active, 6 queue)
   7.3. Glucosyl transferase (11 genes, done, active, 11 queue)
   7.4. Myosin (17 genes, done, 17 active, 0 queue)
   7.5. clathrin and related endocytosis (12 genes, 3 done, 2 active, 7 queue)
   7.6. kinesin-related proteins (60 genes, done, 41 active, 19 queue)
   7.7. Amylase (9 genes, 9 done, active, 0 queue)
   7.8. Chitinase (5 genes, 2 done, 2 active, 1 queue)
   7.9. Fructofuranosidase (invertases) (5 genes, 2 done, active, 3 queue)